USA-Database Developer III (IT)

MindlanceWaltham, MA

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Overview

We are seeking an experienced Cloud Infrastructure / AI / ML / Data Engineer to support variety of projects across Genomic Medicine Unit (GMU) research and platform work. This contractor role focuses on providing infrastructure solutions to enable AI / ML models developments and applications. As such, the position will require pipelines execution, environment management, AI / ML model development / deployment, management of data for various bioinformatics workflows.

This position is year contract with possibility of extension. Full time, on site at Waltham, MA.

Required Experience

years of experience in cloud infrastructure, AI / ML development, and bioinformatics pipeline management
Advanced degree (MS or PhD) in Bioinformatics, Computational Biology, Computer Science or related field
Demonstrated expertise with various computing platforms (HPC, B, DNAnexus, AWS Sagemaker AI)
Strong background in NGS data analysis and pipeline automation

Key Responsibilities

Pipeline Execution & Management : Run and maintain bioinformatics pipelines on cloud platforms

Environment Management : Configure and support data / pipeline environments using B, and DNAnexus

AI Infrastructure : Set up and maintain environments for AI model development and inference (AWS Sagemaker AI)

Data Visualization : Create intuitive visualization tools for bench scientists and present data effectively

LLM Development : Develop RAG (Retrieval-Augmented Generation) LLMs for Gene Therapy GMU use cases

Automation : Develop and deploy agents to optimize / run routine NGS analyses and automate metadata verification

Technical Skills

Cloud computing platforms (AWS, GCP)

Containerization technologies (Docker, Kubernetes)

Programming languages (Python, R, Bash)

Experience with NGS data analysis workflows and automation (Snakemake, Nextflow)

Experience developing / deploying AI / ML frameworks

Data visualization tools and libraries

EEO :

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Developer Iii • Waltham, MA